Nos publications

Les publications listées ci-dessous présentent des exemples d’applications qui ont été réalisées par ViroScan3D.

Type de publication :

195. Nicolas Baillet., Stéphanie Reynard., Emeline Perthame., Jimmy Hortion., Alexandra Journeaux., Mathieu Mateo., Xavier Carnec., Justine Schaeffer., Caroline Picard., Laura Barrot., Stéphane Barron., Audrey Vallve., Aurélie Duthey., Frédéric Jacquot., Cathy Boehringer., Grégory Jouvion., Natalia Pietrosemoli., Rachel Legendre., Marie-Agnès Dillies., Richard Allan., Catherine Legras-Lachuer., Caroline Carbonnelle., Hervé Raoul., & Sylvain Baize. Systemic viral spreading and defective host responses are associated with fatal Lassa fever in macaques. Communications Biology, 2020 transcriptome, RNAseq

194. Fouret J., Brunet F.G., Binet M., Aurine N., Enchéry F., Croze S., Guinier M., Goumaidi A., Preininger D., Volff J.N., Bailly-Bechet M., Lachuer J., Horvat B., Legras-Lachuer C. Sequencing the genome of Indian Flying Fox, natural reservoir of Nipah virus, using hybrid assembly and conservative secondary scaffolding. Frontier in Microbiology, 2020 10.3389/fmicb.2020.01807 genome de-novo, DNASeq Illumina-MinION, bat genome, NIV

193. Nicolas De Lamballerie C., Pizzorno A. Dubois J., Padey B., Julien T., Traversier A., Carbonneau J., Orcel E., Lina B., Roche M., Textoris J. Boivin G., Legras-Lachuer C., Terrier O., and M. Rosa-Calatrava. Human Respiratory Syncytial Virus-induced immune signature of infection revealed by transcriptome analysis of clinical pediatric nasopharyngeal swab samples. J.Inf. Dis. 2020 DOI: 10.1093/infdis/jiaa468 PMID: 32726438 Transcriptome, Drug repositioning, Illumina, respiratory virus

192. Gaudino M, Aurine N, Dumont C, Fouret J, Ferren M, Mathieu C, Reynard O, Volchkov VE, Legras-Lachuer C, Georges-Courbot MC, Horvat B. High Pathogenicity of Nipah Virus from Pteropus lylei Fruit Bats, Cambodia. Emerg Infect Dis. 2020 Jan;26(1):104-113. doi: 10.3201/eid2601.191284 PMID: 31855143 (Genome virus, NGS, Nipah virus, NGS Illumina)

191. Berthel E, Vincent A, Eberst L, Torres AG, Dacheux E, Rey C, Marcel V, Paraqindes H, Lachuer J, Catez F, Pouplana LR, Treilleux I, Diaz JJ, Venezia ND. Uncovering the Translational Regulatory Activity of the Tumor Suppressor BRCA1. Cells. 2020 Apr 10;9(4). pii: E941. doi: 10.3390/cells9040941. PMID: 32290274 (Transcriptome, polysomes profiling, transcriptome, Affymetrix microarrays, cancer)

190. Matera Eva-Laure, Fouret Julien, Baulu Estelle, Perrial Emeline, Bousfiha Zineb, Abdelkamel Chettab, Lars Petter Jordheim, Charles Dumontet. Enhanced Sensitivity of Idelalisib and Ibrutinib-Resistant Cell Lines to Anti-CD38 Antibodies. J Cancer Sci Clin Ther 2020; 4 (1): 071-077

189. Gerossier L, Dubois A, Paturel A, Fares N, Cohen D, Merle P, Lachuer J, Wierinckx A, Saintigny P, Bancel B, Selves J, Schnitzler A, Ouine B, Cartier A, de Koning L, Puard V, Bieche I, Hernandez-Vargas H, Hall J, Chemin I. PARP inhibitors and radiation potentiate liver cell death in vitro. Do hepatocellular carcinomas have an achilles’ heel? .Clin Res Hepatol Gastroenterol. 2020 Nov 9:S2210-7401(20)30294-1. doi: 10.1016/j.clinre.2020.09.014. Online ahead of print.PMID: 33183998

188. Burel-Vandenbos F, Pierron G, Thomas C, Reynaud S, Gregoire V, Duhil De Benaze G, Croze S, Chivoret N, Honavar M, Figarella-Branger D, Maurage CA, Pedeutour F, Hasselblatt M, Godfraind C. A polyphenotypic malignant paediatric brain tumour presenting a MN1-PATZ1 fusion, no epigenetic similarities with CNS High-Grade Neuroepithelial Tumour with MN1 Alteration (CNS HGNET-MN1) and related to PATZ1-fused sarcomas. Neuropathol Appl Neurobiol. 2020 May 12. doi: 10.1111/nan.12626. [Epub ahead of print] PMID: 32397004 (DNA methylation, Beadarray 850K, FFPE, cancer)

187. Caterina F Donini, Myriam El Helou, Anne Wierinckx, Balázs Győrffy, Sophie Aires, Aurélie Escande, Séverine Croze, Philippe Clezardin, Joël Lachuer, Mona Diab-Assaf, Sandra E Ghayad, Béatrice Fervers, Vincent Cavaillès, Véronique Maguer-Satta, Pascale A Cohen. Long-Term Exposure of Early-Transformed Human Mammary Cells to Low Doses of Benzo[a]pyrene and/or Bisphenol A Enhances Their Cancerous Phenotype via an AhR/GPR30 Interplay. Front Oncol. 2020 May 29;10:712. doi: 10.3389/fonc.2020.00712. eCollection 2020. (RNA-seq)

186. Robelin P, Tod M, Colomban O, Lachuer J, Ray-Coquard I, Rauglaudre G, Joly F, Chevalier-Place A, Combe P, Lortholary A, Hamizi S, Raban N, Ferron G, Meunier J, Berton-Rigaud D, Alexandre J, Kaminsky MC, Dubot C, Leary A, Malaurie E, You B. Comparative analysis of predictive values of the kinetics of 11 circulating miRNAs and of CA125 in ovarian cancer during first line treatment (a GINECO study). Gynecol Oncol. 2020 Jul 22:S0090-8258(20)33656-8. doi: 10.1016/j.ygyno.2020.07.021. Online ahead of print.PMID: 32712155 (miRNA circulant, PCR)

185. Cariou M, Henri H, Martinez S, Duret L, Charlat S. How consistent is RAD-seq divergence with DNA-barcode based clustering in insects? Mol Ecol Resour. 2020 Apr 27. doi: 10.1111/1755-0998.13178. [Epub ahead of print] PMID: 32340081 (Metagenomes, Microbiome, Viromes, Fungiomes, RAD-seq)

184. Lasolle H, Elsensohn MH, Wierinckx A, Alix E, Bonnefille C, Vasiljevic A, Cortet C, Decoudier B, Sturm N, Gaillard S, Ferrière A, Roy P, Jouanneau E, Bertolino P, Bardel C, Sanlaville D, Raverot G. Chromosomal instability in the prediction of pituitary neuroendocrine tumors prognosis. Acta Neuropathol Commun. 2020 Nov 10;8(1):190. doi: 10.1186/s40478-020-01067-5.PMID: 33168091

183. Rossi C, Tosolini M, Gravelle P, Pericart S, Kanoun S, Evrard S, Gilhodes J, Franchini DM, Amara N, Syrykh C, Bories P, Oberic L, Ysebaert L, Martin L, Ramla S, Robert P, Tabouret-Viaud C, Casasnovas RO, Fournié JJ, Bezombes C, Laurent C. Baseline SUVmax is related to tumor cell proliferation and patient outcome in follicular lymphoma. Haematologica. 2020 Dec 17; Online ahead of print. doi: 10.3324/haematol.2020.263194

182. Laure Perrin-Cocon, Olivier Diaz, Clémence Jacquemin, Valentine Barthel, Eva Ogire, Christophe Ramière, Patrice André, Vincent Lotteau, Pierre-Olivier Vidalain. The current landscape of coronavirus-host protein-protein interactions. J Transl Med. 2020 Aug 18;18(1):319. doi: 10.1186/s12967-020-02480-z. PMID: 32811513 PMCID: PMC7432461 DOI: 10.1186/s12967-020-02480-z

181. Isnard C, Hernandez SB, Guérin F, Joalland F, Goux D, Gravey F, Auzou M, Enot D, Meignen P, Giard JC, Cava F, Cattoir V. Unexpected cell wall alteration-mediated bactericidal activity of the antifungal caspofungin against vancomycin-resistant Enterococcus faecium. Antimicrob Agents Chemother. 2020 Aug 10:AAC.01261-20. doi: 10.1128/AAC.01261-20. Online ahead of print. PMID: 32778553

180. Durand AL, Dufour A, Aubert-Foucher E, Oger-Desfeux C, Pasdeloup M, Lustig S, Servien E, Vaz G, Perrier-Groult E, Mallein-Gerin F, Lafont JE. The Lysine Specific Demethylase-1 Negatively Regulates the COL9A1 Gene in Human Articular Chondrocytes. Int J Mol Sci. 2020 Aug 31;21(17):E6322. doi: 10.3390/ijms21176322. PMID: 32878268

179. Gross-Amat O, Guillen M, Gimeno JP, Salzet M, Lebonvallet N, Misery L, Auxenfans C, Nataf S. Molecular Mapping of Hydrogen Sulfide Targets in Normal Human Keratinocytes. Int J Mol Sci. 2020 Jun 30;21(13):4648. doi: 10.3390/ijms21134648. PMID: 32629886

178. Charlotte Genestet, Elisabeth Hodille, Alexia Barbry, Jean-Luc Berland, Jonathan Hoffman, Emilie Westeel, Jean-Baptiste Claude, Valentine Berti, Fabiola Bastian, Michel Guichardant, Samuel Venner, Florence Ader, Gérard Lina, Christophe Ginevra, Sylvain Goutelle, Oana Dumitrescu, on behalf of the Lyon TB study group. Mycobacterium tuberculosis micro-diversity promotes intra-macrophagic persistence and antibiotic tolerance; bioRxiv preprint

177. Koroknai V, Szász I, Hernandez-Vargas H, Fernandez-Jimenez N, Cuenin C, Herceg Z, Vízkeleti L, Ádány R, Ecsedi S, Balázs M. DNA hypermethylation is associated with invasive phenotype of malignant melanoma. Exp Dermatol. 2020 Jan;29(1):39-50. doi: 10.1111/exd.14047. Epub 2019 Nov 14. PMID:31602702

175. Mateo M, Reynard S, Carnec X, Journeaux A, Baillet N, Schaeffer J, Picard C, Legras-Lachuer C, Allan R, Perthame E, Hillion KH, Pietrosemoli N, Dillies MA, Barrot L, Vallve A, Barron S, Fellmann L, Gaillard JC, Armengaud J, Carbonnelle C, Raoul H, Tangy F, Baize. Vaccines inducing immunity to Lassa virus glycoprotein and nucleoprotein protect macaques after a single shot. S. Sci Transl Med. 2019 Oct 2;11(512). pii: eaaw3163. doi: 10.1126/scitranslmed.aaw3163. PMID:31578242 (Transcriptome, mRNA-seq, virology, vaccine, Lassa virus, simian)