Nos publications

Les publications listées ci-dessous présentent des exemples d’applications qui ont été réalisées par ViroScan3D.

Type de publication :

208. R. LaPolla, MC. Testard, O. Garcia, A. Goumaidi, C. Legras-Lachuer, B. De SaintVis, Identification of differentially expressed gene pathways between cytopathogenic and non-cytopathogenic BVDV-1 strains by analysis of the transcriptome of infected primary bovine cells. 2022 Feb;567:34-46. doi: 10.1016/j.virol.2021.12.005. Bovine viral diarrhea virus, Transcriptome, RNAseq, NGS Illumina

207. Bellanger A, Le Diep T, Vendrell J, Wierinckx A, Pongor L, Solassol J, Lachuer J, Clezardin P, Gyorffy B, Cohen P. Exploring the Significance of the Exon 4-Skipping Isoform of the ZNF217 Oncogene in Breast Cancer. Front Oncol. 2021. doi: 10.3389/fonc.2021.647269. Cancer

206. Christelle Guéré, Armelle Bigouret, Alex Nkengne, Katell Vié, Anthony Gélis, Joshua Dulong, Jérôme Lamartine, Bérengère Fromy. In elderly Caucasian women, younger facial perceived age correlates with better forearm skin microcirculation reactivity. Skin research and technology. First published: 05 July 2021 https://doi.org/10.1111/srt.13080. Transcriptome, NGS Illumina

205. Octavia Cadassou, Prescillia Forey, Christelle Machon, Edoardo Petrotto, Kamel Chettab , Maria Grazia Tozzi, Jérôme Guitton, Charles Dumontet, Emeline Cros-Perrial and Lars Petter Jordheim. Transcriptional and Metabolic Investigation in 50-Nucleotidase Deficient Cancer Cell Lines. Cells 2021, 10, 2918. https://doi.org/ 10.3390/cells10112918. RNA sequencing

204. Parisot, N., Vargas-Chávez, C., Goubert, C. et al. The transposable element-rich genome of the cereal pest Sitophilus oryzae. BMC Biol 19, 241 (2021).https://doi.org/10.1186/s12915-021-01158-2. Genome, NGS, Illumina

203. Bletsa M, Vrancken B, Gryseels S, Boonen I, Fikatas A, Li Y, Laudisoit A, Lequime S, Bryja J, Makundi R, Meheretu Y, Akaibe BD, Mbalitini SG, Van de Perre F, Van Houtte N, Těšíková J, Wollants E, Van Ranst M, Pybus OG, Drexler JF, Verheyen E, Leirs H, Gouy de Bellocq J, Lemey P. Molecular detection and genomic characterization of diverse hepaciviruses in African rodents.Virus Evol. 2021. doi: 10.1093/ve/veab036. Hepatits C virus, Genome virus,, NGS Illumina

Genestet C, Hodille E, Barbry A, Berland JL, Hoffmann J, Westeel E, Bastian F, Guichardant M, Venner S, Lina G, Ginevra C, Ader F, Goutelle S, Dumitrescu O. Rifampicin exposure reveals within-host Mycobacterium tuberculosis diversity in patients with delayed culture conversion. PLoS Pathog. 2021. doi: 10.1371/journal.ppat.1009643. Mycobacterium, Transcriptome, RNAseq, NGS Illumina

201. Godart M, Frau C, Farhat D, Giolito MV, Jamard C, Le Nevé C, Freund JN, Penalva LO, Sirakov M, Plateroti M. Murine intestinal stem cells are highly sensitive to modulation of the T3/TRα1-dependent pathway. Development. 2021. doi: 10.1242/dev.194357.

200. Jarrosson L, Costechareyre C, Gallix F, Ciré S, Gay F, Imbaud O, Teinturier R, Marangoni E, Aguéra K, Delloye-Bourgeois C, Castellani V. An avian embryo patient-derived xenograft model for preclinical studies of human breast cancers. iScience. 2021. doi: 10.1016/j.isci.2021.103423. Transcriptome, RNAseq, cancer

199. Loraine Jarrosson, Clélia Costechareyre, Fanny Gallix, Séverine Ciré, Fabien Gay, Olivier Imbaud, Elisabetta Marangoni, Karine Aguéra, Céline Delloye-Bourgeois, Valérie Castellani. Modeling breast cancer by grafting patient tumor samples in the avian embryo: an in vivo platform for therapy evaluation coupled to large scale molecular analyses. bioRxiv preprint https://doi.org/10.1101/2021.04.26.441511. 2021. Transcriptome, RNAseq, cancer

198. Laure Perrin-Cocon, Pierre-Olivier Vidalain, Clémence Jacquemin, Anne Aublin-Gex, Keedrian Olmstead, Baptiste Panthu, Gilles Jeans Philippe Rautureau, Patrice André, Piotr Nyczka, Marc-Thorsten Hütt, Nivea Amoedo, Rodrigue Rossignol, Fabian Volker Filipp, Vincent Lotteau, Olivier Diaz. A hexokinase isoenzyme switch in human liver cancer cells promotes lipogenesis and enhances innate immunity. Commun Biol . 2021 Feb 16;4(1):217. doi: 10.1038/s42003-021-01749-3. Transcriptome, RNAseq, cancer

197. Bert Vanmechelen 1, Zafeiro Zisi 1, Sophie Gryseels 2 3, Joëlle Goüy de Bellocq 4 5, Bram Vrancken 1, Philippe Lemey 1, Piet Maes 1, Magda Bletsa 1. Phylogenomic Characterization of Lopma Virus and Praja Virus, Two Novel Rodent-Borne Arteriviruses. Viruses 2021 Sep 15;13(9):1842. doi: 10.3390/v13091842. Genome virus, Arteriviridae, NGS Illumina

 

196. Thibaud Parpaite, Lucie Brosse, Nina Séjourné, Amandine Laur, Yasmine Mechioukhi, Patrick Delmas, Bertrand Coste, Patch-seq of mouse DRG neurons reveals candidate genes for specific mechanosensory functions, Cell Reports, Volume 37, Issue 5,2021, 109914, ISSN 2211-1247, https://doi.org/10.1016/j.celrep.2021.109914. Single-cell RNA sequencing

195. Nicolas Baillet., Stéphanie Reynard., Emeline Perthame., Jimmy Hortion., Alexandra Journeaux., Mathieu Mateo., Xavier Carnec., Justine Schaeffer., Caroline Picard., Laura Barrot., Stéphane Barron., Audrey Vallve., Aurélie Duthey., Frédéric Jacquot., Cathy Boehringer., Grégory Jouvion., Natalia Pietrosemoli., Rachel Legendre., Marie-Agnès Dillies., Richard Allan., Catherine Legras-Lachuer., Caroline Carbonnelle., Hervé Raoul., & Sylvain Baize. Systemic viral spreading and defective host responses are associated with fatal Lassa fever in macaques. Communications Biology, 2021 Transcriptome, RNAseq

194. Fouret J., Brunet F.G., Binet M., Aurine N., Enchéry F., Croze S., Guinier M., Goumaidi A., Preininger D., Volff J.N., Bailly-Bechet M., Lachuer J., Horvat B., Legras-Lachuer C. Sequencing the genome of Indian Flying Fox, natural reservoir of Nipah virus, using hybrid assembly and conservative secondary scaffolding. Frontier in Microbiology, 2020 10.3389/fmicb.2020.01807 genome de-novo, DNASeq Illumina-MinION, bat genome, NIV

193. Nicolas De Lamballerie C., Pizzorno A. Dubois J., Padey B., Julien T., Traversier A., Carbonneau J., Orcel E., Lina B., Roche M., Textoris J. Boivin G., Legras-Lachuer C., Terrier O., and M. Rosa-Calatrava. Human Respiratory Syncytial Virus-induced immune signature of infection revealed by transcriptome analysis of clinical pediatric nasopharyngeal swab samples. J.Inf. Dis. 2020 DOI: 10.1093/infdis/jiaa468 PMID: 32726438 Transcriptome, Drug repositioning, Illumina, respiratory virus

192. Gaudino M, Aurine N, Dumont C, Fouret J, Ferren M, Mathieu C, Reynard O, Volchkov VE, Legras-Lachuer C, Georges-Courbot MC, Horvat B. High Pathogenicity of Nipah Virus from Pteropus lylei Fruit Bats, Cambodia. Emerg Infect Dis. 2020 Jan;26(1):104-113. doi: 10.3201/eid2601.191284 PMID: 31855143 (Genome virus, NGS, Nipah virus, NGS Illumina)

191. Berthel E, Vincent A, Eberst L, Torres AG, Dacheux E, Rey C, Marcel V, Paraqindes H, Lachuer J, Catez F, Pouplana LR, Treilleux I, Diaz JJ, Venezia ND. Uncovering the Translational Regulatory Activity of the Tumor Suppressor BRCA1. Cells. 2020 Apr 10;9(4). pii: E941. doi: 10.3390/cells9040941. PMID: 32290274 (Transcriptome, polysomes profiling, transcriptome, Affymetrix microarrays, cancer)

190. Matera Eva-Laure, Fouret Julien, Baulu Estelle, Perrial Emeline, Bousfiha Zineb, Abdelkamel Chettab, Lars Petter Jordheim, Charles Dumontet. Enhanced Sensitivity of Idelalisib and Ibrutinib-Resistant Cell Lines to Anti-CD38 Antibodies. J Cancer Sci Clin Ther 2020; 4 (1): 071-077

189. Gerossier L, Dubois A, Paturel A, Fares N, Cohen D, Merle P, Lachuer J, Wierinckx A, Saintigny P, Bancel B, Selves J, Schnitzler A, Ouine B, Cartier A, de Koning L, Puard V, Bieche I, Hernandez-Vargas H, Hall J, Chemin I. PARP inhibitors and radiation potentiate liver cell death in vitro. Do hepatocellular carcinomas have an achilles’ heel? .Clin Res Hepatol Gastroenterol. 2020 Nov 9:S2210-7401(20)30294-1. doi: 10.1016/j.clinre.2020.09.014. Online ahead of print.PMID: 33183998