Nos publications

Les publications listées ci-dessous présentent des exemples d’applications qui ont été réalisées par ViroScan3D.

Type de publication :

1.Caceres M., Lachuer J., Zappala MA, Redmond JC., Kudo L., Gechwind DH., Lockhart DJ., Preuss TM and Barlow C. Elevated gene expression levels distinguish human from non-human primate brains. Proc Natl Acad Sci USA, 2003. 28;100(22):13030-5 DOI: 10.1073/pnas.2135499100 Transcriptome, microarray

12.Schluth-Bolard C., M. Till, A. Labalme, C. Rey, E. Banquart, A. Fautrelle, T. Martin-Denavit, M. Le Lorc’h, S. P. Romana, V. Lazar, P. Edery, D. Sanlaville. TWIST microdeletion identified by array CGH in a patient presenting Saethre-Chotzen phenotype and a complex rearrangement involving chromosomes 2 and 7. Eur J Med Genet. 2008 Mar-Apr;51(2):156-64. Epub 2007 Dec 24. Genotypage, NGS Illumina

94.Dkhissi-Benyahya O, Coutanson C, Knoblauch K, Lahouaoui H, Leviel V, Rey C, Bennis M, Cooper HM. The absence of melanopsin alters retinal clock function and dopamine regulation by light. Cell Mol Life Sci. 2013 Apr 19. OI: 10.1007/s00018-013-1338-9

97. Pontoizeau C, Mouchiroud L, Molin L, Mergoud-Dit-Lamarche A, Dalliere N, Toulhoat P, Elena-Herrmann B, Solari F. Metabolomics analysis uncovers that dietary restriction buffers metabolic changes associated with aging in Caenorhabditis elegans. J Proteome Res. 2014 May 13. [Epub ahead of print] PMID: 24819046 [PubMed – as supplied by publisher]. Transcriptome, RT-PCR

98. Guérin F1, Galimand M2, Tuambilangana F3, Courvalin P2, Cattoir V1. Overexpression of the novel MATE fluoroquinolone efflux pump FepA in Listeria monocytogenes is driven by inactivation of its local repressor FepR. PLoS One. 2014 Sep 4;9(9):e106340. doi: 10.1371/journal.pone.0106340. eCollection 2014.

99. Berland JL, de Carvalho FM, de Almeida LG, Bablishvili N, Gauthier M, Paranhos-Baccalà G, de Vasconcelos AT. Draft Genome Sequence of Mycobacterium tuberculosis Clinical Strain G-12-005. Genome Announc. 2014 May 8;2(3). pii: e00385-14. doi: 10.1128/genomeA.00385-14.

110. Kwasiborski A, Mondy S, Chong TM, Barbey C, Chan KG, Beury-Cirou A, Latour X, Faure D. Transcriptome of the quorum-sensing signal-degrading Rhodococcus erythropolis responds differentially to virulent and avirulent Pectobacterium atrosepticum. Heredity (Edinb). 2015 May;114(5):476-84. doi: 10.1038/hdy.2014.121. Epub 2015 Jan 14.

111. El-Madani M, Hénin E, Lefort T, Tod M, Freyer G, Cassier P, Valette PJ, Rodriguez-Lafrasse C, Berger F, Guitton J, Lachuer J, Slimane K, Barrois C, You B. Multiparameter Phase I trials: a tool for model-based development of targeted agent combinations – example of EVESOR trial. Future Oncol. 2015 May;11(10):1511-8. doi: 10.2217/fon.15.49.

112. Helene Henri, Marie Cariou, Gabriel Terraz, Sonia Martinez, Adil El Filali, Marine Veyssiere, Laurent Duret, Sylvain Charlat; Optimization of multiplexed RADseq libraries using low-cost Adaptors Genetica (2015) 143:139–143

103. Cattoir V, Isnard C, Cosquer T, Odhiambo A, Bucquet F, Guérin F, Giard JC. Genomic analysis of reduced susceptibility to tigecycline in Enterococcus faecium. Antimicrob Agents Chemother. 2015 Jan;59(1):239-44. doi: 10.1128/AAC.04174-14. Epub 2014 Oct 27. PMID: 25348531 http://www.ncbi.nlm.nih.gov/pubmed/25348531 (Genotyping, WGS, bacteria)

123. Verdurand M, Chauveau F, Daoust A, Morel AL, Bonnefoi F, Liger F, Bérod A, Zimmer L. Differential effects of amyloid-beta 1-40 and 1-42 fibrils on 5-HT1A serotonin receptors in rat brain. Neurobiol Aging. 2016 Apr;40:11-21. doi: 10.1016/j.neurobiolaging.2015.12.008. Epub 2015 Dec 19.

135. Glauzy S, Peffault de Latour R, André-Schmutz I, Lachuer J, Servais S, Socié G, Clave E, Toubert A. Alterations of circulating lymphoid committed progenitor cellular metabolism after allogeneic stem cell transplantation in humans. Exp Hematol. 2016 Sep;44(9):811-816.e3

126. Gay O, Gilquin B, Assard N, Stuelsatz P, Delphin C, Lachuer J, Gidrol X, Baudier J. Refilins are short-lived Actin-bundling proteins that regulate lamellipodium protrusion dynamics. Biol Open. 2016 Oct 15;5(10):1351-1361. doi: 10.1242/bio.019588

127. Debing Y,Ramière C,Dallmeier K, Piorkowski G, Trabaud MA, Lebossé F, Scholtès C, Roche M, Legras-Lachuer C, de Lamballerie X, André P, Neyts J. Hepatitis E virus mutations associated with ribavirin treatment failure result in altered viral fitness and ribavirin sensitivity. J Hepatol. 2016 May 9. pii: S0168-8278(16)30187-8. doi: 10.1016/j.jhep.2016.05.002. [Epub ahead of print]. Viral, genome, resequencing

129. Bachy E, Urb M, Chandra S, Robinot R, Bricard G, de Bernard S, Traverse-Glehen A, Gazzo S, Blond O, Khurana A, Baseggio L, Heavican T, Ffrench M, Crispatzu G, Mondière P, Schrader A, Taillardet M, Thaunat O, Martin N, Dalle S, Le Garff-Tavernier M, Salles G, Lachuer J, Hermine O, Asnafi V, Roussel M, Lamy T, Herling M, Iqbal J, Buffat L, Marche PN, Gaulard P, Kronenberg M, Defrance T, Genestier L. CD1d-restricted peripheral T cell lymphoma in mice and humans. J Exp Med. 2016 Apr 11 pii: jem.20150794. [Epub ahead of print] PMID: 27069116. (FACS, transcriptome, microarrays).

130. Duchemin-Pelletier E, Baulard M, Spreux E, Prioux M, Burute M, Mograbi B, Guyon L, Théry M, Cochet C, filhol O. Stem Cell-Like Properties of CK2β-down Regulated Mammary Cells. Cancer (Basel). 2017 Aug 31;9(9). pii: E114. doi: 10.3390/cancers9090114. (miRNA, agilent).

131. Boutrand LB, Thépot A, Muther C, Boher A, Robic J, Guéré C, Vié K, Damour O, Lamartine J. Repeated short climatic change affects the epidermal differentiation program and leads to matrix remodeling in a human organotypic skin model. Clin Cosmet Investig Dermatol. 2017 Feb 13;10:43-50. doi: 10.2147/CCID.S120800. eCollection 2017. (beadarray illumina HT12)

137. Wierinckx A, Roche M, Legras-Lachuer C, Trouillas J, Raverot G, Lachuer J. MicroRNAs in pituitary tumors. Mol Cell Endocrinol. 2017 Jan 13. pii: S0303-7207(17)30025-4.

138. Lasolle H, Riche B, Decaussin-Petrucci M, Dantony E, Lapras V, Cornu C, Lachuer J, Peix JL, Lifane JC, Capraru OM, Selmi-Ruby S, Rousset B, Borson-Chazot F, Roy P Predicting thyroid nodule malignancy at several prevalence values with a combined Bethesda-molecular test. Transl Res. 2017 Jul 22. pii: S1931-5244(17)30142-1. (PCR, Biopsies)

141. Salignon J, Richard M, Fulcrand E, Duplus-Bottin H, Yvert G. Genomics of cellular proliferation in periodic environmental fluctuations. Mol Syst Biol. 2018 Mar 5;14(3):e7823. doi: 10.15252/msb.20177823. nPMID: 29507053 https://pubmed.ncbi.nlm.nih.gov/29507053/ (bareseq, Illumina)